Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8453396-SRR8453397/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  148,436,855
 Normal Paired: 142,364,893 (95.91%)
 Chimeric Paired: 3,149,985 (2.12%)
 Chimeric Ambiguous: 359,748 (0.24%)
 Unmapped: 2,562,229 (1.73%)
 Ligation Motif Present: 35,202 (0.02%)
Alignable (Normal+Chimeric Paired): 145,514,878 (98.03%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-28T09:19:11,745]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,350,137 (26.51%)
PCR Duplicates: 106,164,741 (71.52%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 40,459,447
Intra-fragment Reads: 19,760,788 (13.31% / 50.22%)
Below MAPQ Threshold: 5,377,831 (3.62% / 13.67%)
Hi-C Contacts: 14,211,518 (9.57% / 36.12%)
 Ligation Motif Present: 9,112  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 24%
Inter-chromosomal: 2,842,302  (1.91% / 7.22%)
Intra-chromosomal: 11,369,216  (7.66% / 28.89%)
Short Range (<20Kb): 6,674,123  (4.50% / 16.96%)
Long Range (>20Kb): 4,695,018  (3.16% / 11.93%)